I just found some of the panel base that the normals were screwed up on. On the Aft Right RCS Tank isolation switch base (the red base the switch rocks on) were flipped wrong. So it is beyond the switches. For that part I think it would be easiest for me to do one panel base at a time and just select it all and recalc the normal outside. That is what I did for O7 and it looks correct.
Also there was a typo in the switch name (only in the effect definition section) on right-rcs-tank-isol-a-345 and right-rcs-tank-isol-b-345 which caused those switches to be outside the effects definition. I remember fixing something similar before and it got reverted or it was different switches.